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Which package in R supports the exploratory analysis of genomic data?
in Technology by Bronze Status (8,651 points) | 73 views

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The adegen package helps with exploratory analysis of genomic data.

Adegenet provides formal (S4) classes for storing and handling various genetic data, including genetic markers with varying ploidy and hierarchical population structure ('genind' class), alleles counts by populations ('genpop'), and genome-wide SNP data ('genlight'). It also implements original multivariate methods (DAPC, sPCA), graphics, statistical tests, simulation tools, distance and similarity measures, and several spatial methods. A range of both empirical and simulated datasets is also provided to illustrate various methods.
by Diamond (53,765 points)

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